Once a set of genes that are co-regulated has been found, the promoter regions of these genes may be analyzed for conserved patterns that represent sites of interaction with specific transcription factors.

Genome analysis is the process of identifying, measuring, or comparing genomic features. This includes DNA sequence, gene expression, structural variation, and regulatory and functional element annotation.

Topics include: Functional Classification of Genes, Global Gene Regulation, & Prediction of Gene Function Based on a Composite Analysis.